PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.338590.1
Common NameCsa_3G824850, LOC101212616
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 234aa    MW: 26130.4 Da    PI: 9.7748
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.338590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl
   Cucsa.338590.1 14 KGPWTPEEDHKLLAYIHQHGHGSWRALPSKAGLERCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding52.51.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ + +++++lG++ W++Ia +++ +Rt++++k++w+++l
   Cucsa.338590.1  67 RGKFSLQEEQAIEQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-25664IPR009057Homeodomain-like
PROSITE profilePS5129416.724961IPR017930Myb domain
SuperFamilySSF466891.14E-2911108IPR009057Homeodomain-like
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
PfamPF002499.6E-171461IPR001005SANT/Myb domain
CDDcd001673.92E-101661No hitNo description
PROSITE profilePS5129425.97362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-2665117IPR009057Homeodomain-like
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002499.5E-1667112IPR001005SANT/Myb domain
CDDcd001671.87E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRSPYCDSS GLKKGPWTPE EDHKLLAYIH QHGHGSWRAL PSKAGLERCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQAIEQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKKLIKMG  120
IDPITHKPTK NNNEEMKVKN NINNSTLSHM AQWETARLEA EERLARQHKI QPIPSSSGGV  180
ESPTTSSTAT GNCQHLAGER GVADDLPSSG SGSAGESKNY GWPDTILGEF LRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-112LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-112LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136689.11e-175PREDICTED: transcription factor MYB76
SwissprotQ9SPG51e-68MYB76_ARATH; Transcription factor MYB76
TrEMBLA0A0A0LC221e-175A0A0A0LC22_CUCSA; Uncharacterized protein
STRINGPGSC0003DMT4000033821e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-85myb domain protein 16
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]